S
EvolutionWorkflow
SFTPServer
sftpserver
SGEEnvironment
sge
SGEJobService
sge
SLURMEnvironment
slurm
SLURMJobService
slurm
SS
BatchEnvironment DesktopGridEnvironment BDIIStorageServers SSHPersistentStorage
SSHAccess
ssh
SSHAuthentication
ssh
SSHBatchJob
ssh
SSHEnvironment
ssh
SSHJobService
ssh
SSHPersistentStorage
ssh
SSHService
ssh
SSHStorageService
ssh
SUBMITTED
ExecutionState
SampleSampling
combine
Sampling
sampling
SamplingCombineDecorator
combine
SamplingPackage
sampling
SaveABCHook
abc
SaveHook
file
SavePopulationHook
evolution
SavedDockerImage
udocker
ScalaCompilation
expansion
ScalaPackage
scala
ScalaREPL
console
ScalaTask
scala
ScalaWrappedCompilation
expansion
Scalable
Genome
Scalar
Genome
Scaled
Scalable
ScaledScalar
Scalable
ScaledSequence
Scalable
ScalingGenomeTask
evolution
ScalingPopulationTask
evolution
ScriptFileDoesNotExists
project
Seed
GASeeder
SelectFileDomain
file
SelectableModule
module
Seq
scala
SeqOfEndofunctorDecorator
ToolsPackage
Sequence
Genome pattern
Serialiser
converter
SerializedContextResults
message
SerializedJob
environment
Serializer
dsl
SerializerService
serializer
Services
services BatchEnvironment
ServicesContainer
services
SetBuilder
BuilderPackage
ShallowWMSRetryCount
EGIEnvironment
SharedStorage
ssh
ShuffleDomain
modifier
ShuffleSampling
combine
ShuffledGrouping
batch
SimpleBatchEnvironment
environment
SimpleBatchExecutionJob
environment
SimpleRemoteStorage
storage
SimpleStorage
storage
SizeRange
range
SizeStep
range
Skip
pattern
SlaveTransition
transition
SlidingDomain
modifier
Slot
Classes transition
SlotDataflowProblem
DataflowProblem
SlotType
DataflowProblem
SobolSampling
quasirandom
SortByNameDomain
modifier
SortedByDomain
modifier
Source
mole
SourceDecorator
puzzle
SourceExceptionRaised
MoleExecution
SourceFile
Imports
SourceProblem
DataflowProblem
Sources
mole
Starting
MoleExecution
State
job State
StateChange
MoleJob
StateChanged
BatchJob
StateChangedCallBack
MoleJob
StaticHeader
expansion
StatusFiles
egi
StdOutErr
systemexec
SteadyStateEvolution
evolution
StepRange
range
Stochastic
evolution
StochasticGA
WorkflowIntegration
StochasticGAIntegration
evolution
StochasticGenomeProfile
GenomeProfile
Storage
storage
StorageAvailabilityFactor
EGIEnvironment
StorageFitnessPower
EGIEnvironment
StorageRoot
SSHPersistentStorage
StorageService
storage
StorageSizeFactor
EGIEnvironment
StorageSuccessRateFactor
EGIEnvironment
StorageTimeFactor
EGIEnvironment
StoragesGC
storage
StoragesGCUpdateInterval
BatchEnvironment
Strain
pattern
StrainerCapsule
Classes mole
StrainerTaskDecorator
mole
Stream
scala
StringBuilder
scala
StringIndexOutOfBoundsException
scala
Strings
BundleClassPathBuilder
SubMoleExecution
mole
SubmissionEnvironment
execution
Submit
refresh
SubmitActor
refresh
Submitted
refresh
Switch
pattern
SystemExecPackage
systemexec
SystemExecTask
systemexec
SystemExecTaskBuilder
systemexec
s
SortedByDomain ScaledSequence AbstractSamplingCombineDecorator DiscreteFactorDecorator SamplingCombineDecorator
sample
AbstractSamplingCombineDecorator
samples
LHS SobolSampling
sampling
workflow plugin RepeatSampling SampleSampling ShuffleSampling TakeSampling ZipWithIndexSampling
samplings
CompleteSampling ConcatenateSampling ZipSampling
save
Authentication AuthenticationStore Serializer DesktopGridAuthenticationGUI EGIAuthenticationGUI PrivateKeyAuthenticationGUI LoginAuthenticationGUI
saveArchive
Serializer
saveAs
Authentication
sbtVersion
BuildInfo
scala
NativeType task root
scalaCompilation
ScalaTask
scalaVersion
BuildInfo
scaladget
root
scalarIsScalable
Scalable
scale
math Double2Scalable range PatternAxe
scaled
GAIntegration Input InputConverter Scalable
scheduler
ThreadProvider
scheme
AuthenticationRequest Token
scope
AuthenticationRequest
script
ScalaWrappedCompilation Workspace
scriptExtension
Project
scriptsObjects
Project
second
singularTimeConversion
seed
Stochastic NetLogoTask NetLogo5Task NetLogo6Task
seeder
Services ServicesContainer MoleServices Services
select
EGIEnvironment WorkflowIntegrationSelector
selectableModules
module
separator
CSVSampling CSVSource CSVPackage CSVToVariables CSVToVariablesBuilder
separators
Imports
seqConfiguration
ConfigurationString
seqIsFunctor
DSLPackage
seqOfFunction
ToolsPackage
seqOfStringToCommands
OSCommands
seqToDefaultSet
DefaultSet
seqToSeqOfFromContext
ExpansionPackage
sequence
SeqOfEndofunctorDecorator
sequenceIsScalable
Scalable
serialise
SerializerService
serialiseAndArchiveFiles
SerializerService
serialiseFiles
FileSerialisation
serializedJob
BatchExecutionJob GetResult Refresh Submit Submitted Uploaded
serializedRemoteStorage
StorageService
serializer
core
serializerService
Services ServicesContainer Services SaveHook LoadSource
server
DesktopGridService
service
tools DesktopGridEnvironment DIRACEnvironment AuthenticationRequest
services
ConsoleVariables core MoleExecutionContext EGIAuthenticationAPIImpl BatchEnvironment CondorEnvironment DesktopGridEnvironment DIRACEnvironment OAREnvironment PBSEnvironment SGEEnvironment SLURMEnvironment SSHEnvironment
set
Authentication SetBuilder
setEncoder
OpenMOLEAppender
setPasswordTest
Preference
setPreference
Preference
setRawPreference
FilePreference MemoryPreference Preference
setVOTest
EGIAuthenticationAPI EGIAuthenticationAPIImpl
setValue
ConfigurationFile
setup
DIRACEnvironment
sftpserver
tool
sge
environment
sharedDirectory
CondorEnvironment OAREnvironment PBSEnvironment SGEEnvironment SLURMEnvironment SSHEnvironment SSHPersistentStorage
sharedFS
SharedStorage
shuffle
SamplingCombineDecorator
signalDownload
BatchEnvironment
signalUpload
BatchEnvironment
simpleName
Val Name
singularInformationUnitConversion
DSLPackage
singularTimeConversion
DSLPackage
siteURL
buildinfo
size
GroupDomain SlidingDomain TakeDomain Range RangeDomainDecorator Input Scalable UniqueGenome SampleSampling
slave
Elements
slot
PuzzlePiece IncoherentTypeAggregation MissingInput MissingSourceInput SlotDataflowProblem WrongSourceType WrongType
slotDecorator
PuzzlePackage
slotPuzzlePieceDecoration
PuzzlePackage
slotToCapsuleConverter
Capsule
slotToPuzzle
ToPuzzle
slotToPuzzlePieceConverter
PuzzlePiece
slotToPuzzlePieceDecorator
PuzzlePackage
slotType
DuplicatedName
slots
Mole Puzzle
slurm
environment
snip
Prettifier
source
Replica Replicas ScalaWrappedCompilation SourceExceptionRaised PuzzleDecorator PuzzlePieceDecorator SourceDecorator MissingSourceInput WrongSourceType plugin
sourceCode
ScalaTask
sourceTypeErrors
Validation
sources
MoleExecution Puzzle PuzzlePiece
sourcesToMap
mole
space
Imports
sqrt
BigDecimalOperations
ssh
environment environment
sshd
SFTPServer
sshkey
authentication
sshlogin
authentication
stableIdentifier
Import ImportedFile
stack
ExceptionUtils
stackString
ExceptionPretiffier
stackStringWithMargin
ExceptionPretiffier
start
Activator ErrorPosition Activator Activator FileService OpenMOLEAppender Activator Activator Activator Activator PluginInfoActivator Activator Activator Activator MoleExecution AggregationTransition DataChannel EndExplorationTransition ExplorationTransition ITransition Transition Activator Activator Activator SFTPServer
startAll
PluginManager
startGC
StorageService
startIfNeeded
SFTPServer
startTime
MoleExecution
started
MoleExecution SFTPServer
state
ExecutionJob MoleJob Changed BatchJob JobService DesktopGridService LenormandSampling
statePrototype
EvolutionWorkflow
stateType
EvolutionWorkflow
state_=
ExecutionJob MoleJob BatchJob
static
ScalaWrappedCompilation
staticTypeTag
interpreter
statistics
tool
stdErr
RuntimeResult CARETask StdOutErr SystemExecPackage SystemExecTask UDockerTask
stdOut
RuntimeResult CARETask StdOutErr SystemExecPackage SystemExecTask UDockerTask
step
SlidingDomain DefaultStep RangeDomainDecorator
stepAndSize
SizeRange SizeStep StepRange
steps
LogRange AfterGeneration
stochasticGAIntegration
WorkflowIntegration StochasticGA
stop
Activator Activator Activator Activator Activator Activator Activator PluginInfoActivator Activator Activator ThreadProvider Activator LocalExecutor Activator Activator Activator SFTPServer
stopped
ThreadProvider
storage
communication Replica Replicas BeginDownload BeginUpload EndDownload EndUpload Runtime SerializedJob SimpleBatchEnvironment DeleteFile Resubmit batch SimpleRemoteStorage DesktopGridEnvironment DesktopGridService DumyStorage StatusFiles GridScaleStorage LocalStorage SSHPersistentStorage SSHStorageService
storageId
DesktopGridService
storageSharedLocally
CondorEnvironment OAREnvironment PBSEnvironment SGEEnvironment SLURMEnvironment SSHEnvironment SSHPersistentStorage
storages
BDIIStorageServers
storeErrors
ScalaREPL
strainer
Capsule
strainerInputs
Capsule
strainerOutputs
Capsule
stream
Output
string
UnexpandedElement
stringConfigurationString
ConfigurationString
stringToCommand
Command
stringToCommands
OSCommands
stringToFile
DSLPackage Expandable FromContext ToFromContext
stringToString
Expandable FromContext ToFromContext
stringToTime
DSLPackage
stringToTimeOptional
DSLPackage
strsingToContainerImage
ContainerImage
structure
serializer
stylesheet
scaladget
submit
ThreadProvider LocalEnvironment SubmissionEnvironment SubMoleExecution BatchEnvironment JobService DesktopGridService DIRACEnvironment SSHBatchJob
submitAll
MoleExecution
submitIn
EmptyExplorationTransition ExplorationTransition
submitNextJobsIfReady
ITransition
submitted
Environment LocalEnvironment BatchEnvironment JobServiceQualityControl SSHJobService
success
EndDownload EndUpload QualityControl
successRate
QualityControl
suffix
InputFileArray
systemError
OutputManager
systemOutput
OutputManager
systemexec
task